Indifference graph

In graph theory, a branch of mathematics, an indifference graph is an undirected graph constructed by assigning a real number to each vertex and connecting two vertices by an edge when their numbers are within one unit of each other.^[1] An indifference graph is also the intersection graph of a set of unit intervals, or of properly nested intervals (intervals none of which contains any other one). Based on these two types of interval representations, these graphs are also called unit interval graphs or proper interval graphs; they form a subclass of the interval graphs.

Equivalent characterizations

A finite indifference graph may be equivalently characterized as:

The intersection graph of a set of unit intervals.^[1]
The intersection graph of a set of intervals no two of which are nested (one containing the other).^[1]^[2]
A claw-free interval graph.^[1]^[2]
A graph that does not have an induced subgraph isomorphic to a claw K_1,3, net (a triangle with a degree-one vertex adjacent to each of the triangle vertices), sun (a triangle surrounded by three other triangles that each share one edge with the central triangle), or hole (cycle of length four or more).^[3]
An incomparability graph of semiorder.^[1]
An undirected graph that has a linear order such that, for every three vertices ordered $u$ – $v$ – $w$ , if $uw$ is an edge then so are $uv$ and $vw$ .^[4]
A graph with no astral triple, three vertices connected pairwise by paths that avoid the third vertex and also do not contain two consecutive neighbors of the third vertex.^[5]
A graph in which each connected component contains a path in which each maximal clique of the component forms a contiguous sub-path.^[6]
A graph whose vertices can be numbered in such a way that every shortest path forms a monotonic sequence.^[6]
A graph whose adjacency matrix can be ordered in such a way that, in each row and each column, the nonzeros of the matrix form a contiguous interval adjacent to the main diagonal of the matrix.^[7]
An induced subgraph of a power of a chordless path.^[8]
A leaf power having a leaf root which is a caterpillar.^[8]

For an infinite graph, some of these definitions may differ.

Properties

Because it is a special case of an interval graph, an indifference graph has all the properties of an interval graph; in particular, it is a special case of a chordal graph and of a perfect graph. It is also a special case of a circle graph, something that is not true of an interval graph more generally.

In the Erdős–Rényi model of random graphs, an $n$ -vertex graph whose number of edges is significantly less than $n^{2/3}$ will be an indifference graph with high probability, whereas an $n$ -vertex graph whose number of edges is significantly more than $n^{2/3}$ will not be an indifference graph with high probability.^[9]

The bandwidth of an arbitrary graph $G$ is 1 less than the size of the maximum clique in an indifference graph that contains $G$ as a subgraph and is chosen to minimize the size of the maximum clique.^[10] This property parallels similar relations between pathwidth and interval graphs, and between treewidth and chordal graphs. A weaker notion of width, the clique-width, may be arbitrarily large on indifference graphs.^[11] However, every proper subclass of the indifference graphs that is closed under induced subgraphs has bounded clique-width.^[12]

A connected indifference graph has a Hamiltonian path.^[13] An indifference graph has a Hamiltonian cycle if and only if it is biconnected.^[14]

An indifference graph obeys the reconstruction conjecture: it is uniquely determined by its vertex-deleted subgraphs.^[15]

Algorithms

As with higher dimensional unit disk graphs, it is possible to transform a set of points into their indifference graph, or a set of unit intervals into their unit interval graph, in linear time as measured in terms of the size of the output graph. The algorithm rounds the points (or interval centers) down to the nearest smaller integer, uses a hash table to find all pairs of points whose rounded integers are within 1 of each other (the fixed-radius near neighbors problem), and filters the resulting list of pairs for the ones whose unrounded values are also within 1 of each other.^[16]

It is possible to test whether a given graph is an indifference graph in linear time, by using PQ trees to construct an interval representation of the graph and then testing whether a vertex ordering derived from this representation satisfies the properties of an indifference graph.^[4] It is also possible to base a recognition algorithm for indifference graphs on chordal graph recognition algorithms.^[14] Several alternative linear time recognition algorithms are based on breadth-first search or lexicographic breadth-first search rather than on the relation between indifference graphs and interval graphs.^[17]^[18]^[19]^[20]

Once the vertices have been sorted by the numerical values that describe an indifference graph (or by the sequence of unit intervals in an interval representation), the same ordering can be used to find an optimal graph coloring for these graphs, to solve the shortest path problem, and to construct Hamiltonian paths and maximum matchings, all in linear time.^[4] A Hamiltonian cycle can be found from a proper interval representation of the graph in time $O(n\log n)$ ,^[13] but when the graph itself is given as input, the same problem admits linear-time solution that can be generalized to interval graphs.^[21]^[22]

List coloring remains NP-complete even when restricted to indifference graphs.^[23] However, it is fixed-parameter tractable when parameterized by the total number of colors in the input.^[12]

Applications

In mathematical psychology, indifference graphs arise from utility functions, by scaling the function so that one unit represents a difference in utilities small enough that individuals can be assumed to be indifferent to it.
In this application, pairs of items whose utilities have a large difference may be partially ordered by the relative order of their utilities, giving a semiorder.^[1]^[24]

In bioinformatics, the problem of augmenting a colored graph to a properly colored unit interval graph can be used to model the detection of false negatives in DNA sequence assembly from complete digests.^[25]

References

^ ^a ^b ^c ^d ^e ^f Roberts, Fred S. (1969), "Indifference graphs", Proof Techniques in Graph Theory (Proc. Second Ann Arbor Graph Theory Conf., Ann Arbor, Mich., 1968), Academic Press, New York, pp. 139–146, MR 0252267.
^ ^a ^b Bogart, Kenneth P.; West, Douglas B. (1999), "A short proof that "proper = unit"", Discrete Mathematics, 201 (1–3): 21–23, arXiv:math/9811036, doi:10.1016/S0012-365X(98)00310-0, MR 1687858.
^ Wegner, G. (1967), Eigenschaften der Nerven homologisch-einfacher Familien im Rⁿ, Ph.D. thesis, Göttingen, Germany: Göttingen University. As cited by Hell & Huang (2004).
^ ^a ^b ^c Looges, Peter J.; Olariu, Stephan (1993), "Optimal greedy algorithms for indifference graphs", Computers & Mathematics with Applications, 25 (7): 15–25, doi:10.1016/0898-1221(93)90308-I, MR 1203643.
^ Jackowski, Zygmunt (1992), "A new characterization of proper interval graphs", Discrete Mathematics, 105 (1–3): 103–109, doi:10.1016/0012-365X(92)90135-3, MR 1180196.
^ ^a ^b Gutierrez, M.; Oubiña, L. (1996), "Metric characterizations of proper interval graphs and tree-clique graphs", Journal of Graph Theory, 21 (2): 199–205, doi:10.1002/(SICI)1097-0118(199602)21:2<199::AID-JGT9>3.0.CO;2-M, MR 1368745.
^ Mertzios, George B. (2008), "A matrix characterization of interval and proper interval graphs", Applied Mathematics Letters, 21 (4): 332–337, doi:10.1016/j.aml.2007.04.001, MR 2406509.
^ ^a ^b Brandstädt, Andreas; Hundt, Christian; Mancini, Federico; Wagner, Peter (2010), "Rooted directed path graphs are leaf powers", Discrete Mathematics, 310 (4): 897–910, doi:10.1016/j.disc.2009.10.006.
^ Cohen, Joel E. (1982), "The asymptotic probability that a random graph is a unit interval graph, indifference graph, or proper interval graph", Discrete Mathematics, 40 (1): 21–24, doi:10.1016/0012-365X(82)90184-4, MR 0676708.
^ Kaplan, Haim; Shamir, Ron (1996), "Pathwidth, bandwidth, and completion problems to proper interval graphs with small cliques", SIAM Journal on Computing, 25 (3): 540–561, doi:10.1137/S0097539793258143, MR 1390027.
^ Golumbic, Martin Charles; Rotics, Udi (1999), "The clique-width of unit interval graphs is unbounded", Proceedings of the Thirtieth Southeastern International Conference on Combinatorics, Graph Theory, and Computing (Boca Raton, FL, 1999), Congressus Numerantium, vol. 140, pp. 5–17, MR 1745205.
^ ^a ^b Lozin, Vadim V. (2008), "From tree-width to clique-width: excluding a unit interval graph", Algorithms and computation, Lecture Notes in Comput. Sci., vol. 5369, Springer, Berlin, pp. 871–882, doi:10.1007/978-3-540-92182-0_76, ISBN 978-3-540-92181-3, MR 2539978.
^ ^a ^b Bertossi, Alan A. (1983), "Finding Hamiltonian circuits in proper interval graphs", Information Processing Letters, 17 (2): 97–101, doi:10.1016/0020-0190(83)90078-9, MR 0731128.
^ ^a ^b Panda, B. S.; Das, Sajal K. (2003), "A linear time recognition algorithm for proper interval graphs", Information Processing Letters, 87 (3): 153–161, doi:10.1016/S0020-0190(03)00298-9, MR 1986780.
^ von Rimscha, Michael (1983), "Reconstructibility and perfect graphs", Discrete Mathematics, 47 (2–3): 283–291, doi:10.1016/0012-365X(83)90099-7, MR 0724667.
^ Bentley, Jon L.; Stanat, Donald F.; Williams, E. Hollins Jr. (1977), "The complexity of finding fixed-radius near neighbors", Information Processing Letters, 6 (6): 209–212, doi:10.1016/0020-0190(77)90070-9, MR 0489084.
^ Corneil, Derek G.; Kim, Hiryoung; Natarajan, Sridhar; Olariu, Stephan; Sprague, Alan P. (1995), "Simple linear time recognition of unit interval graphs", Information Processing Letters, 55 (2): 99–104, CiteSeerX 10.1.1.39.855, doi:10.1016/0020-0190(95)00046-F, MR 1344787.
^ Herrera de Figueiredo, Celina M.; Meidanis, João; Picinin de Mello, Célia (1995), "A linear-time algorithm for proper interval graph recognition", Information Processing Letters, 56 (3): 179–184, doi:10.1016/0020-0190(95)00133-W, MR 1365411.
^ Corneil, Derek G. (2004), "A simple 3-sweep LBFS algorithm for the recognition of unit interval graphs", Discrete Applied Mathematics, 138 (3): 371–379, doi:10.1016/j.dam.2003.07.001, MR 2049655.
^ Hell, Pavol; Huang, Jing (2004), "Certifying LexBFS recognition algorithms for proper interval graphs and proper interval bigraphs", SIAM Journal on Discrete Mathematics, 18 (3): 554–570, doi:10.1137/S0895480103430259, MR 2134416.
^ Keil, J. Mark (1985), "Finding Hamiltonian circuits in interval graphs", Information Processing Letters, 20 (4): 201–206, doi:10.1016/0020-0190(85)90050-X, MR 0801816.
^ Ibarra, Louis (2009), "A simple algorithm to find Hamiltonian cycles in proper interval graphs", Information Processing Letters, 109 (18): 1105–1108, doi:10.1016/j.ipl.2009.07.010, MR 2552898.
^ Marx, Dániel (2006), "Precoloring extension on unit interval graphs", Discrete Applied Mathematics, 154 (6): 995–1002, doi:10.1016/j.dam.2005.10.008, MR 2212549.
^ Roberts, Fred S. (1970), "On nontransitive indifference", Journal of Mathematical Psychology, 7 (2): 243–258, doi:10.1016/0022-2496(70)90047-7, MR 0258486.
^ Goldberg, Paul W.; Golumbic, Martin C.; Kaplan, Haim; Shamir, Ron (2009), "Four strikes against physical mapping of DNA", Journal of Computational Biology, 2 (2): 139–152, doi:10.1089/cmb.1995.2.139, PMID 7497116.

External links

Information System on Graph Class Inclusions: unit interval graph

[roberts-1] ^ ^a ^b ^c ^d ^e ^f Roberts, Fred S. (1969), "Indifference graphs", Proof Techniques in Graph Theory (Proc. Second Ann Arbor Graph Theory Conf., Ann Arbor, Mich., 1968), Academic Press, New York, pp. 139–146, MR 0252267.

[bogart-west-2] Bogart, Kenneth P.; West, Douglas B. (1999), "A short proof that "proper = unit"", Discrete Mathematics, 201 (1–3): 21–23, arXiv:math/9811036, doi:10.1016/S0012-365X(98)00310-0, MR 1687858.

[3] Wegner, G. (1967), Eigenschaften der Nerven homologisch-einfacher Familien im Rⁿ, Ph.D. thesis, Göttingen, Germany: Göttingen University. As cited by Hell & Huang (2004).

[greedy-4] Looges, Peter J.; Olariu, Stephan (1993), "Optimal greedy algorithms for indifference graphs", Computers & Mathematics with Applications, 25 (7): 15–25, doi:10.1016/0898-1221(93)90308-I, MR 1203643.

[5] Jackowski, Zygmunt (1992), "A new characterization of proper interval graphs", Discrete Mathematics, 105 (1–3): 103–109, doi:10.1016/0012-365X(92)90135-3, MR 1180196.

[metric-6] Gutierrez, M.; Oubiña, L. (1996), "Metric characterizations of proper interval graphs and tree-clique graphs", Journal of Graph Theory, 21 (2): 199–205, doi:10.1002/(SICI)1097-0118(199602)21:2<199::AID-JGT9>3.0.CO;2-M, MR 1368745.

[7] Mertzios, George B. (2008), "A matrix characterization of interval and proper interval graphs", Applied Mathematics Letters, 21 (4): 332–337, doi:10.1016/j.aml.2007.04.001, MR 2406509.

[leafroot-8] Brandstädt, Andreas; Hundt, Christian; Mancini, Federico; Wagner, Peter (2010), "Rooted directed path graphs are leaf powers", Discrete Mathematics, 310 (4): 897–910, doi:10.1016/j.disc.2009.10.006.

[9] Cohen, Joel E. (1982), "The asymptotic probability that a random graph is a unit interval graph, indifference graph, or proper interval graph", Discrete Mathematics, 40 (1): 21–24, doi:10.1016/0012-365X(82)90184-4, MR 0676708.

[10] Kaplan, Haim; Shamir, Ron (1996), "Pathwidth, bandwidth, and completion problems to proper interval graphs with small cliques", SIAM Journal on Computing, 25 (3): 540–561, doi:10.1137/S0097539793258143, MR 1390027.

[11] Golumbic, Martin Charles; Rotics, Udi (1999), "The clique-width of unit interval graphs is unbounded", Proceedings of the Thirtieth Southeastern International Conference on Combinatorics, Graph Theory, and Computing (Boca Raton, FL, 1999), Congressus Numerantium, vol. 140, pp. 5–17, MR 1745205.

[lozin-12] Lozin, Vadim V. (2008), "From tree-width to clique-width: excluding a unit interval graph", Algorithms and computation, Lecture Notes in Comput. Sci., vol. 5369, Springer, Berlin, pp. 871–882, doi:10.1007/978-3-540-92182-0_76, ISBN 978-3-540-92181-3, MR 2539978.

[bertossi-13] Bertossi, Alan A. (1983), "Finding Hamiltonian circuits in proper interval graphs", Information Processing Letters, 17 (2): 97–101, doi:10.1016/0020-0190(83)90078-9, MR 0731128.

[pandas-14] Panda, B. S.; Das, Sajal K. (2003), "A linear time recognition algorithm for proper interval graphs", Information Processing Letters, 87 (3): 153–161, doi:10.1016/S0020-0190(03)00298-9, MR 1986780.

[15] von Rimscha, Michael (1983), "Reconstructibility and perfect graphs", Discrete Mathematics, 47 (2–3): 283–291, doi:10.1016/0012-365X(83)90099-7, MR 0724667.

[16] Bentley, Jon L.; Stanat, Donald F.; Williams, E. Hollins Jr. (1977), "The complexity of finding fixed-radius near neighbors", Information Processing Letters, 6 (6): 209–212, doi:10.1016/0020-0190(77)90070-9, MR 0489084.

[17] Corneil, Derek G.; Kim, Hiryoung; Natarajan, Sridhar; Olariu, Stephan; Sprague, Alan P. (1995), "Simple linear time recognition of unit interval graphs", Information Processing Letters, 55 (2): 99–104, CiteSeerX 10.1.1.39.855, doi:10.1016/0020-0190(95)00046-F, MR 1344787.

[18] Herrera de Figueiredo, Celina M.; Meidanis, João; Picinin de Mello, Célia (1995), "A linear-time algorithm for proper interval graph recognition", Information Processing Letters, 56 (3): 179–184, doi:10.1016/0020-0190(95)00133-W, MR 1365411.

[19] Corneil, Derek G. (2004), "A simple 3-sweep LBFS algorithm for the recognition of unit interval graphs", Discrete Applied Mathematics, 138 (3): 371–379, doi:10.1016/j.dam.2003.07.001, MR 2049655.

[20] Hell, Pavol; Huang, Jing (2004), "Certifying LexBFS recognition algorithms for proper interval graphs and proper interval bigraphs", SIAM Journal on Discrete Mathematics, 18 (3): 554–570, doi:10.1137/S0895480103430259, MR 2134416.

[21] Keil, J. Mark (1985), "Finding Hamiltonian circuits in interval graphs", Information Processing Letters, 20 (4): 201–206, doi:10.1016/0020-0190(85)90050-X, MR 0801816.

[22] Ibarra, Louis (2009), "A simple algorithm to find Hamiltonian cycles in proper interval graphs", Information Processing Letters, 109 (18): 1105–1108, doi:10.1016/j.ipl.2009.07.010, MR 2552898.

[23] Marx, Dániel (2006), "Precoloring extension on unit interval graphs", Discrete Applied Mathematics, 154 (6): 995–1002, doi:10.1016/j.dam.2005.10.008, MR 2212549.

[24] Roberts, Fred S. (1970), "On nontransitive indifference", Journal of Mathematical Psychology, 7 (2): 243–258, doi:10.1016/0022-2496(70)90047-7, MR 0258486.

[25] Goldberg, Paul W.; Golumbic, Martin C.; Kaplan, Haim; Shamir, Ron (2009), "Four strikes against physical mapping of DNA", Journal of Computational Biology, 2 (2): 139–152, doi:10.1089/cmb.1995.2.139, PMID 7497116.

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